Preheat oven to 400 degrees Fahrenheit. Cover the raisins with hot or boiling water and set aside.

Mix together the oats, wheat germ, flours, baking powder, salt, baking soda, and cinnamon. Stir in the sugar. Add the orange juice, milk, vanilla, eggs, applesauce, and oil. Stir until just combined.

Drain the raisins, add to the mix, and stir briefly. Divide the batter among 12 paper-lined cases.

Bake for 15 to 20 minutes, until the muffins spring back when gently pressed.